HLA Reporting Implementation Guide
0.0.1 - Draft

HLA Reporting Implementation Guide - Local Development build (v0.0.1). See the Directory of published versions

: HLA-A Genotype Example (HLA-A*01:01:01:01+HLA-A*01:02) - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "HLA-A-GenotypeExample"];
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://fhir.nmdp.org/ig/hla-reporting/StructureDefinition/hla-genotype";
       fhir:index 0;
       fhir:link <http://fhir.nmdp.org/ig/hla-reporting/StructureDefinition/hla-genotype>     ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: HLA-A-GenotypeExample</p><p><b>meta</b>: </p><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://terminology.hl7.org/CodeSystem/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: Genotype display name <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '84413-4' = 'Genotype display name)</span></p><p><b>value</b>: hla#3.25.0#HLA-A*01:01:01:01+HLA-A*01:02 <span style=\"background: LightGoldenRodYellow\">(Details : {http://glstring.org code 'hla#3.25.0#HLA-A*01:01:01:01+HLA-A*01:02' = 'hla#3.25.0#HLA-A*01:01:01:01+HLA-A*01:02)</span></p><p><b>derivedFrom</b>: </p><ul><li><a href=\"Observation-HLA-A-AlleleExample1.html\">Generated Summary: id: HLA-A-AlleleExample1; <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 84414-2}\">Haplotype name</span>; <span title=\"Codes: {http://glstring.org hla#3.25.0#HLA-A*01:01:01:01}\">hla#3.25.0#HLA-A*01:01:01:01</span></a></li><li><a href=\"Observation-HLA-A-AlleleExample2.html\">Generated Summary: id: HLA-A-AlleleExample2; <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 84414-2}\">Haplotype name</span>; <span title=\"Codes: {http://glstring.org hla#3.25.0#HLA-A*01:02}\">hla#3.25.0#HLA-A*01:02</span></a></li></ul><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Gene studied [ID] <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID])</span></td><td>HLA-A <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org/geneId code 'HGNC:4931' = 'HLA-A', given as 'HLA-A'})</span></td></tr></table></div>"
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.category [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
       fhir:Coding.code [ fhir:value "laboratory" ]     ]
  ];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:84413-4;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "84413-4" ]     ]
  ];
  fhir:Observation.valueCodeableConcept [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://glstring.org" ];
       fhir:Coding.code [ fhir:value "hla#3.25.0#HLA-A*01:01:01:01+HLA-A*01:02" ]     ]
  ];
  fhir:Observation.derivedFrom [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "Observation/HLA-A-AlleleExample1" ]
  ], [
     fhir:index 1;
     fhir:Reference.reference [ fhir:value "Observation/HLA-A-AlleleExample2" ]
  ];
  fhir:Observation.component [
     fhir:index 0;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:48018-6;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "48018-6" ]       ]     ];
     fhir:Observation.component.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://www.genenames.org/geneId" ];
         fhir:Coding.code [ fhir:value "HGNC:4931" ];
         fhir:Coding.display [ fhir:value "HLA-A" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.