HLA Reporting Implementation Guide
0.0.1 - Draft

HLA Reporting Implementation Guide - Local Development build (v0.0.1). See the Directory of published versions

: HLA HGNC GeneID CodeSystem - JSON Representation

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{
  "resourceType" : "CodeSystem",
  "id" : "hla-genename-codesystem",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>HLA HGNC GeneID CodeSystem</h2><div><p>CodeSystem of HLA gene group subset of HGNC GeneId Codesystem</p>\n</div><p><b>Copyright Statement:</b> National Human Genome Research Institute (NHGRI)</p><p>This code system http://www.genenames.org/geneId defines many codes, of which the following are a subset:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">HGNC:4931<a name=\"hla-genename-codesystem-HGNC.584931\"> </a></td><td>HLA-A</td><td>major histocompatibility complex, class I, A</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4932<a name=\"hla-genename-codesystem-HGNC.584932\"> </a></td><td>HLA-B</td><td>major histocompatibility complex, class I, B</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4933<a name=\"hla-genename-codesystem-HGNC.584933\"> </a></td><td>HLA-C</td><td>major histocompatibility complex, class I, C</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4934<a name=\"hla-genename-codesystem-HGNC.584934\"> </a></td><td>HLA-DMA</td><td>major histocompatibility complex, class II, DM alpha</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4935<a name=\"hla-genename-codesystem-HGNC.584935\"> </a></td><td>HLA-DMB</td><td>major histocompatibility complex, class II, DM beta</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4936<a name=\"hla-genename-codesystem-HGNC.584936\"> </a></td><td>HLA-DOA</td><td>major histocompatibility complex, class II, DO alpha</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4937<a name=\"hla-genename-codesystem-HGNC.584937\"> </a></td><td>HLA-DOB</td><td>major histocompatibility complex, class II, DO beta</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4938<a name=\"hla-genename-codesystem-HGNC.584938\"> </a></td><td>HLA-DPA1</td><td>major histocompatibility complex, class II, DP alpha 1</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4939<a name=\"hla-genename-codesystem-HGNC.584939\"> </a></td><td>HLA-DPA2</td><td>major histocompatibility complex, class II, DP alpha 2 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:19393<a name=\"hla-genename-codesystem-HGNC.5819393\"> </a></td><td>HLA-DPA3</td><td>major histocompatibility complex, class II, DP alpha 3 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4940<a name=\"hla-genename-codesystem-HGNC.584940\"> </a></td><td>HLA-DPB1</td><td>major histocompatibility complex, class II, DP beta 1</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4941<a name=\"hla-genename-codesystem-HGNC.584941\"> </a></td><td>HLA-DPB2</td><td>major histocompatibility complex, class II, DP beta 2 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4942<a name=\"hla-genename-codesystem-HGNC.584942\"> </a></td><td>HLA-DQA1</td><td>major histocompatibility complex, class II, DQ alpha 1</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4943<a name=\"hla-genename-codesystem-HGNC.584943\"> </a></td><td>HLA-DQA2</td><td>major histocompatibility complex, class II, DQ alpha 2</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4944<a name=\"hla-genename-codesystem-HGNC.584944\"> </a></td><td>HLA-DQB1</td><td>major histocompatibility complex, class II, DQ beta 1</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4945<a name=\"hla-genename-codesystem-HGNC.584945\"> </a></td><td>HLA-DQB2</td><td>major histocompatibility complex, class II, DQ beta 2</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4946<a name=\"hla-genename-codesystem-HGNC.584946\"> </a></td><td>HLA-DQB3</td><td>major histocompatibility complex, class II, DQ beta 3</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4947<a name=\"hla-genename-codesystem-HGNC.584947\"> </a></td><td>HLA-DRA</td><td>major histocompatibility complex, class II, DR alpha</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4948<a name=\"hla-genename-codesystem-HGNC.584948\"> </a></td><td>HLA-DRB1</td><td>major histocompatibility complex, class II, DR beta 1</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4950<a name=\"hla-genename-codesystem-HGNC.584950\"> </a></td><td>HLA-DRB2</td><td>major histocompatibility complex, class II, DR beta 2 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4951<a name=\"hla-genename-codesystem-HGNC.584951\"> </a></td><td>HLA-DRB3</td><td>major histocompatibility complex, class II, DR beta 3</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4952<a name=\"hla-genename-codesystem-HGNC.584952\"> </a></td><td>HLA-DRB4</td><td>major histocompatibility complex, class II, DR beta 4</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4953<a name=\"hla-genename-codesystem-HGNC.584953\"> </a></td><td>HLA-DRB5</td><td>major histocompatibility complex, class II, DR beta 5</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4954<a name=\"hla-genename-codesystem-HGNC.584954\"> </a></td><td>HLA-DRB6</td><td>major histocompatibility complex, class II, DR beta 6 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4955<a name=\"hla-genename-codesystem-HGNC.584955\"> </a></td><td>HLA-DRB7</td><td>major histocompatibility complex, class II, DR beta 7 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4956<a name=\"hla-genename-codesystem-HGNC.584956\"> </a></td><td>HLA-DRB8</td><td>major histocompatibility complex, class II, DR beta 8 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4957<a name=\"hla-genename-codesystem-HGNC.584957\"> </a></td><td>HLA-DRB9</td><td>major histocompatibility complex, class II, DR beta 9 (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4962<a name=\"hla-genename-codesystem-HGNC.584962\"> </a></td><td>HLA-E</td><td>major histocompatibility complex, class I, E</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4963<a name=\"hla-genename-codesystem-HGNC.584963\"> </a></td><td>HLA-F</td><td>major histocompatibility complex, class I, F</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4964<a name=\"hla-genename-codesystem-HGNC.584964\"> </a></td><td>HLA-G</td><td>major histocompatibility complex, class I, G</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4965<a name=\"hla-genename-codesystem-HGNC.584965\"> </a></td><td>HLA-H</td><td>major histocompatibility complex, class I, H (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4967<a name=\"hla-genename-codesystem-HGNC.584967\"> </a></td><td>HLA-J</td><td>major histocompatibility complex, class I, J (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4969<a name=\"hla-genename-codesystem-HGNC.584969\"> </a></td><td>HLA-K</td><td>major histocompatibility complex, class I, K (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:4970<a name=\"hla-genename-codesystem-HGNC.584970\"> </a></td><td>HLA-L</td><td>major histocompatibility complex, class I, L (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:19406<a name=\"hla-genename-codesystem-HGNC.5819406\"> </a></td><td>HLA-N</td><td>major histocompatibility complex, class I, N (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:21196<a name=\"hla-genename-codesystem-HGNC.5821196\"> </a></td><td>HLA-P</td><td>major histocompatibility complex, class I, P (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:19395<a name=\"hla-genename-codesystem-HGNC.5819395\"> </a></td><td>HLA-S</td><td>major histocompatibility complex, class I, S (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:23478<a name=\"hla-genename-codesystem-HGNC.5823478\"> </a></td><td>HLA-T</td><td>major histocompatibility complex, class I, T (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:23477<a name=\"hla-genename-codesystem-HGNC.5823477\"> </a></td><td>HLA-U</td><td>major histocompatibility complex, class I, U (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:23482<a name=\"hla-genename-codesystem-HGNC.5823482\"> </a></td><td>HLA-V</td><td>major histocompatibility complex, class I, V (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:23425<a name=\"hla-genename-codesystem-HGNC.5823425\"> </a></td><td>HLA-W</td><td>major histocompatibility complex, class I, W (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:19385<a name=\"hla-genename-codesystem-HGNC.5819385\"> </a></td><td>HLA-X</td><td>major histocompatibility complex, class I, X (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:33913<a name=\"hla-genename-codesystem-HGNC.5833913\"> </a></td><td>HLA-Y</td><td>major histocompatibility complex, class I, Y (pseudogene)</td></tr><tr><td style=\"white-space:nowrap\">HGNC:19394<a name=\"hla-genename-codesystem-HGNC.5819394\"> </a></td><td>HLA-Z</td><td>major histocompatibility complex, class I, Z (pseudogene)</td></tr></table></div>"
  },
  "url" : "http://www.genenames.org/geneId",
  "version" : "0.0.1",
  "name" : "HLAGeneIdCS",
  "title" : "HLA HGNC GeneID CodeSystem",
  "status" : "active",
  "experimental" : false,
  "date" : "2020-06-01T16:44:42-05:00",
  "publisher" : "NMDP/Be The Match",
  "contact" : [
    {
      "name" : "Bob Milius",
      "telecom" : [
        {
          "system" : "email",
          "value" : "mailto:bmilius@nmdp.org"
        }
      ]
    }
  ],
  "description" : "CodeSystem of HLA gene group subset of HGNC GeneId Codesystem",
  "copyright" : "National Human Genome Research Institute (NHGRI)",
  "content" : "fragment",
  "concept" : [
    {
      "code" : "HGNC:4931",
      "display" : "HLA-A",
      "definition" : "major histocompatibility complex, class I, A"
    },
    {
      "code" : "HGNC:4932",
      "display" : "HLA-B",
      "definition" : "major histocompatibility complex, class I, B"
    },
    {
      "code" : "HGNC:4933",
      "display" : "HLA-C",
      "definition" : "major histocompatibility complex, class I, C"
    },
    {
      "code" : "HGNC:4934",
      "display" : "HLA-DMA",
      "definition" : "major histocompatibility complex, class II, DM alpha"
    },
    {
      "code" : "HGNC:4935",
      "display" : "HLA-DMB",
      "definition" : "major histocompatibility complex, class II, DM beta"
    },
    {
      "code" : "HGNC:4936",
      "display" : "HLA-DOA",
      "definition" : "major histocompatibility complex, class II, DO alpha"
    },
    {
      "code" : "HGNC:4937",
      "display" : "HLA-DOB",
      "definition" : "major histocompatibility complex, class II, DO beta"
    },
    {
      "code" : "HGNC:4938",
      "display" : "HLA-DPA1",
      "definition" : "major histocompatibility complex, class II, DP alpha 1"
    },
    {
      "code" : "HGNC:4939",
      "display" : "HLA-DPA2",
      "definition" : "major histocompatibility complex, class II, DP alpha 2 (pseudogene)"
    },
    {
      "code" : "HGNC:19393",
      "display" : "HLA-DPA3",
      "definition" : "major histocompatibility complex, class II, DP alpha 3 (pseudogene)"
    },
    {
      "code" : "HGNC:4940",
      "display" : "HLA-DPB1",
      "definition" : "major histocompatibility complex, class II, DP beta 1"
    },
    {
      "code" : "HGNC:4941",
      "display" : "HLA-DPB2",
      "definition" : "major histocompatibility complex, class II, DP beta 2 (pseudogene)"
    },
    {
      "code" : "HGNC:4942",
      "display" : "HLA-DQA1",
      "definition" : "major histocompatibility complex, class II, DQ alpha 1"
    },
    {
      "code" : "HGNC:4943",
      "display" : "HLA-DQA2",
      "definition" : "major histocompatibility complex, class II, DQ alpha 2"
    },
    {
      "code" : "HGNC:4944",
      "display" : "HLA-DQB1",
      "definition" : "major histocompatibility complex, class II, DQ beta 1"
    },
    {
      "code" : "HGNC:4945",
      "display" : "HLA-DQB2",
      "definition" : "major histocompatibility complex, class II, DQ beta 2"
    },
    {
      "code" : "HGNC:4946",
      "display" : "HLA-DQB3",
      "definition" : "major histocompatibility complex, class II, DQ beta 3"
    },
    {
      "code" : "HGNC:4947",
      "display" : "HLA-DRA",
      "definition" : "major histocompatibility complex, class II, DR alpha"
    },
    {
      "code" : "HGNC:4948",
      "display" : "HLA-DRB1",
      "definition" : "major histocompatibility complex, class II, DR beta 1"
    },
    {
      "code" : "HGNC:4950",
      "display" : "HLA-DRB2",
      "definition" : "major histocompatibility complex, class II, DR beta 2 (pseudogene)"
    },
    {
      "code" : "HGNC:4951",
      "display" : "HLA-DRB3",
      "definition" : "major histocompatibility complex, class II, DR beta 3"
    },
    {
      "code" : "HGNC:4952",
      "display" : "HLA-DRB4",
      "definition" : "major histocompatibility complex, class II, DR beta 4"
    },
    {
      "code" : "HGNC:4953",
      "display" : "HLA-DRB5",
      "definition" : "major histocompatibility complex, class II, DR beta 5"
    },
    {
      "code" : "HGNC:4954",
      "display" : "HLA-DRB6",
      "definition" : "major histocompatibility complex, class II, DR beta 6 (pseudogene)"
    },
    {
      "code" : "HGNC:4955",
      "display" : "HLA-DRB7",
      "definition" : "major histocompatibility complex, class II, DR beta 7 (pseudogene)"
    },
    {
      "code" : "HGNC:4956",
      "display" : "HLA-DRB8",
      "definition" : "major histocompatibility complex, class II, DR beta 8 (pseudogene)"
    },
    {
      "code" : "HGNC:4957",
      "display" : "HLA-DRB9",
      "definition" : "major histocompatibility complex, class II, DR beta 9 (pseudogene)"
    },
    {
      "code" : "HGNC:4962",
      "display" : "HLA-E",
      "definition" : "major histocompatibility complex, class I, E"
    },
    {
      "code" : "HGNC:4963",
      "display" : "HLA-F",
      "definition" : "major histocompatibility complex, class I, F"
    },
    {
      "code" : "HGNC:4964",
      "display" : "HLA-G",
      "definition" : "major histocompatibility complex, class I, G"
    },
    {
      "code" : "HGNC:4965",
      "display" : "HLA-H",
      "definition" : "major histocompatibility complex, class I, H (pseudogene)"
    },
    {
      "code" : "HGNC:4967",
      "display" : "HLA-J",
      "definition" : "major histocompatibility complex, class I, J (pseudogene)"
    },
    {
      "code" : "HGNC:4969",
      "display" : "HLA-K",
      "definition" : "major histocompatibility complex, class I, K (pseudogene)"
    },
    {
      "code" : "HGNC:4970",
      "display" : "HLA-L",
      "definition" : "major histocompatibility complex, class I, L (pseudogene)"
    },
    {
      "code" : "HGNC:19406",
      "display" : "HLA-N",
      "definition" : "major histocompatibility complex, class I, N (pseudogene)"
    },
    {
      "code" : "HGNC:21196",
      "display" : "HLA-P",
      "definition" : "major histocompatibility complex, class I, P (pseudogene)"
    },
    {
      "code" : "HGNC:19395",
      "display" : "HLA-S",
      "definition" : "major histocompatibility complex, class I, S (pseudogene)"
    },
    {
      "code" : "HGNC:23478",
      "display" : "HLA-T",
      "definition" : "major histocompatibility complex, class I, T (pseudogene)"
    },
    {
      "code" : "HGNC:23477",
      "display" : "HLA-U",
      "definition" : "major histocompatibility complex, class I, U (pseudogene)"
    },
    {
      "code" : "HGNC:23482",
      "display" : "HLA-V",
      "definition" : "major histocompatibility complex, class I, V (pseudogene)"
    },
    {
      "code" : "HGNC:23425",
      "display" : "HLA-W",
      "definition" : "major histocompatibility complex, class I, W (pseudogene)"
    },
    {
      "code" : "HGNC:19385",
      "display" : "HLA-X",
      "definition" : "major histocompatibility complex, class I, X (pseudogene)"
    },
    {
      "code" : "HGNC:33913",
      "display" : "HLA-Y",
      "definition" : "major histocompatibility complex, class I, Y (pseudogene)"
    },
    {
      "code" : "HGNC:19394",
      "display" : "HLA-Z",
      "definition" : "major histocompatibility complex, class I, Z (pseudogene)"
    }
  ]
}